published 2020-03-03 20:48

updated 2023-06-03 22:31

This was originally written in Jupyter in a sort of literate programming style.

Originally I intended this post to go up in January as a year in review (ideally it would've been completed by then) but now it's March so like fuckit I'm just posting what I got through.

I have been collecting data about my life for some time now, and I thought it would be cool to see what it says about me. Here is the Jupyter Notebook I used to gain some insight into my 2019. These numbers probably won't make much sense to you until I get to explaining the process and what they mean.

Common functions

{{{python import json from tasklib import TaskWarrior import datetime import pandas as pd import matplotlib.pyplot as plt import re from sklearn.feature_extraction.text import CountVectorizer from sklearn.feature_extraction.text import TfidfVectorizer }}}

{{{python def only2019(df): return df.filter(like='2019', axis=0) }}}

Journal

=### import journal into habits data =

== TF-IDF for jrnl ==

https://kavita-ganesan.com/extracting-keywords-from-text-tfidf/

{{{python def pre_process(text):

# lowercase
text=text.lower()
#remove tags
#text=re.sub("<!--?.*?-->","",text)
# remove special characters and digits
text=re.sub("(\\d|\\W)+"," ",text)
return text

def sort_coo(coo_matrix): tuples = zip(coo_matrix.col, coo_matrix.data) return sorted(tuples, key=lambda x: (x[1], x[0]), reverse=True)

def extract_topn_from_vector(feature_names, sorted_items, topn=10): """get the feature names and tf-idf score of top n items"""

#use only topn items from vector
sorted_items = sorted_items[:topn]

score_vals = []
feature_vals = []

# word index and corresponding tf-idf score
for idx, score in sorted_items:

    #keep track of feature name and its corresponding score
    score_vals.append(round(score, 3))
    feature_vals.append(feature_names[idx])

#create a tuples of feature,score
#results = zip(feature_vals,score_vals)
results= {}
for idx in range(len(feature_vals)):
    results[feature_vals[idx]]=score_vals[idx]

return results

}}}

{{{python with open('data/tiddlers.json' , 'r') as file: tiddly = json.load(file)

jrnl = pd.DataFrame.from_dict(tiddly) jrnl.set_axis(jrnl['title'], axis='index', inplace=True) jrnl = only2019(jrnl.drop(['created', 'modified'], axis=1)) jrnl.drop(['title', 'tags'], axis=1, inplace=True) jrnl['text'] = jrnl['text'].apply(lambda x: pre_process(x))

get the text column

docs=jrnl['text'].tolist()

tfidf = TfidfVectorizer(stop_words='english') X = tfidf.fit_transform(docs)

sort the tf-idf vectors by descending order of scores

sorted_items=sort_coo(X.tocoo())

extract only the top n; n here is 10

keywords=extract_topn_from_vector(tfidf.get_feature_names(),sorted_items,40)

now print the results

print("\n=====Doc=====")

print(doc)

print("\n===Keywords===") for k in keywords: print(k,keywords[k]) }}}

===Keywords===
rain 0.699
years 0.658
spokes 0.584
new 0.567
dont 0.545
quite 0.507
feeling 0.507
freedom 0.502
despair 0.502
awaits 0.502
voices 0.501
hearing 0.501
hard 0.495
better 0.494
news 0.488
uber 0.469
pay 0.468
graveyard 0.443
cult 0.443
repeatedly 0.437
tech 0.433
laurel 0.431
wedding 0.426
wont 0.422
bit 0.418
tour 0.404
able 0.394
strategy 0.392
like 0.392
clouds 0.383
travelling 0.383
watching 0.383
sources 0.377
flows 0.377
doodling 0.374
successful 0.373
imagine 0.373
ye 0.373
tell 0.371
im 0.37

According to habits I have 49 Journal entries

Let's compare that with this data

{{{python import json }}}

{{{python with open('data/tiddlers.json' , 'r') as file: tiddly = json.load(file)

jrnl = pd.DataFrame.from_dict(tiddly) jrnl.set_axis(jrnl['title'], axis='index', inplace=True) jrnl = only2019(jrnl.drop(['created', 'modified'], axis=1)) jrnl.count() }}}

tags     87
text     88
title    88
dtype: int64

{{{python sameDay = jrnl sameDay['title'] = sameDay.title.map(lambda x: x[:-8]) sameDay[sameDay['title'].duplicated(keep=False)].count() }}}

tags     30
text     30
title    30
dtype: int64

Where are the [87-15=(73)] - 49 = 23 entries that exist but aren't in my loop Habits?

23 Entries before March?

{{{python def beforeMarch(df): return df.filter(regex='(January|Febuary|March)', axis=0) }}}

{{{python beforeMarch(jrnl).count() }}}

tags     23
text     23
title    23
dtype: int64

Taskwarrior

{{{python import json from tasklib import TaskWarrior import datetime import pandas as pd import matplotlib.pyplot as plt }}}

Month Added Completed Deleted Net

January 18 19 0 -1
February 9 7 0 2
March 27 23 0 4
April 13 14 3 -4
May 10 9 0 1
June 17 13 0 4
July 17 17 0 0
August 35 37 0 -2
September 22 24 1 -3
October 19 15 2 2
November 17 16 0 1
December 37 42 1 -6

Total 241 236 7 5

{{{python with open('data/task.json', 'r') as myfile: task = json.load(myfile)

Convert the data into a data frame

Some preliminary analysis

tasks = pd.DataFrame.from_dict(task) tasks.set_axis(tasks['entry'], axis='index', inplace=True) tasks = tasks.drop(['annotations', 'depends', 'parent', 'uuid', 'entry'], axis=1) only2019(tasks).count() }}}

description    241
due            107
end            241
id             241
imask            0
mask             0
modified       241
priority         3
project        188
recur            0
status         241
tags           215
until            0
urgency        241
dtype: int64

{{{python

How many of each tag did I do?

l = only2019(tasks).tags.dropna().to_list() flat_list = [item for sublist in l for item in sublist] print(str(len(set(flat_list))) + " unique tags") print(str(len(l)) + " tagged items") print("The tags are: " + str(set(flat_list)))

fig = plt.figure(figsize=(14,8)) plt.hist(flat_list, rwidth=1/3, align='left', bins=16) plt.show() }}}

16 unique tags
215 tagged items
The tags are: {'rocks', 'friends', 'd.tech', 'chores', 'job', 'prpj', 'fam', 'artifex', 'contact', 'd.infra', 'fun', 'work', 'uni', 'life', 'travel'}

{{{python

Description mining

l = only2019(tasks).description print(l.describe()) print() print("Repeated descriptions: ") for e in l[l.duplicated(keep=False)].unique(): print(" " + e) }}}

count              241
unique             216
top       fold clothes
freq                 7
Name: description, dtype: object

Repeated descriptions: 
  laundry
  haircut
  fold clothes
  recharge my way
  change sheets
  cut hair
  buy condoms
  schedule counsellor meeting
  cut nails
  recharge myway
  book counsellor meeting
  shave
  do laundry

{{{python

Most described task?

TODO

}}}

Habits

{{{python import pandas as pd import calendar import matplotlib import matplotlib.pyplot as plt }}}

{{{python

colNames = ['date', 'Godmode', 'Meditate', 'Exercise', 'Piano','Read', 'Journal', 'Gratitude', 'devlog','Plants', 'Job', 'Draw']

checks = pd.read_csv('data/LoopHabits/Checkmarks.csv', header=0) checks.set_axis(checks['date'], axis='index', inplace=True) checks = checks.drop(['Godmode', 'Piano', 'Gratitude', 'Job', 'date'], axis=1) df = MarchOnwards(only2019(checks)) print("Days done: " + str(countValue(2, df))) print("Non-streak days: " + str(countZeros(df))) print("Streak days: " + str(countValue(1, df))) print("Longest streak: " + str(df.apply(longestStreak, axis=0))) print("Longest zeros: " + str(df.apply(longestZero, axis=0)))

print("Best month: " + str(sumMonth(df)))

sumMonth(df) meanMonth(df)

print("Worst month: " + calendar.month_name[int(sumMonth(df).idxmin())])

plotScore(df)

}}}

Days done: Meditate    64
Exercise    65
Read        69
Journal     49
devlog      32
Plants      38
Draw        12
dtype: int64
Non-streak days: Meditate    176
Exercise    179
Read        161
Journal      70
devlog      154
Plants      120
Draw        252
dtype: int64
Streak days: Meditate     35
Exercise     31
Read         45
Journal     156
devlog       89
Plants      117
Draw         11
dtype: int64
Longest streak: Meditate    17
Exercise    11
Read        12
Journal     55
devlog      29
Plants      87
Draw        17
dtype: int64
Longest zeros: Meditate     23
Exercise     26
Read         43
Journal      27
devlog      121
Plants       54
Draw        229
dtype: int64

{{{python def MarchOnwards(df):

# For habits only, lost my phone in late Febuary, didn't have a recent backup
return df.filter(regex='[0-9]{4}-(0?[4-9]|1?[0-2])-[0-9]{2}', axis=0)

def longestZero(df):

# reverse the series so dates are ascending (increasing?)
# pad out the series with 0s, then diff it to track total, use that total to calculate highest streak
# streak increases when sum is 0
diffStreak = pd.concat([pd.Series([0]) , df[-1], pd.Series([0])]).diff().tolist()
runningSum = 0
streak = 0
streakList = []
for e in diffStreak[1:-1]:
    runningSum += e
    if runningSum == 0:
        streak += 1
    else:
        streakList.append(streak)
        streak = 0
return max(streakList)

def longestStreak(df):

# reverse the series so dates are ascending (increasing?)
# pad out the series with 0s, then diff it to track total, use that total to calculate highest streak
# streak increases when sum is non-zero
diffStreak = pd.concat([pd.Series([0]) , df[-1], pd.Series([0])]).diff().tolist()
runningSum = 0
streak = 0
streakList = []
for e in diffStreak[1:-1]:
    runningSum += e
    if runningSum != 0:
        streak += 1
    else:
        streakList.append(streak)
        streak = 0
return max(streakList)

def sumMonth(df): df2 = df.reset_index() df['month'] = pd.DatetimeIndex(df2['date']).month return df.groupby(['month']).sum()

def meanMonth(df): df2 = df.reset_index() df['month'] = pd.DatetimeIndex(df2['date']).month return df.groupby(['month']).mean()

def plotScore(df): df = meanMonth(df) plt.plot(df) plt.show()

def countZeros(df): return countValue(0, df)

def countValue(countValue, df): return (df == countValue).astype(int).sum()

}}}

{{{python

checking for CSV of simply one habit

colNames = ['date', 'value'] meditateChecks = pd.read_csv('LoopHabits/002 Meditate/Checkmarks.csv', names=colNames, header=None) meditateScore = pd.read_csv('LoopHabits/002 Meditate/Scores.csv', names=colNames, header=None) }}}

{{{python

might be broken now

need to deal with dates in columns

meditateChecks.set_axis(checks['date'], axis='index', inplace=True) df = MarchOnwards(only2019(meditateChecks)) print("Days done: " + str(countValue(2, df))) print("Non-streak days: " + str(countZeros(df))) print("Streak days: " + str(countValue(1, df))) print("Longest streak: " + str(longestStreak(df))) print("Longest zeros: " + str(longestZero(df))) print("Best month: " + calendar.month_name[int(sumMonth(df).idxmax())]) print("Worst month: " + calendar.month_name[int(sumMonth(df).idxmin())]) plotScore(df) }}}

{{{python

Total days for habits: 306

How come when counting streaks I only get 299?

missing 1 week??

print(72 + 195 + 39) longestStreak(onlyMarch(only2019(meditateChecks))) + longestZero(onlyMarch(only2019(meditateChecks))) }}}

306





299

Why don't the above two numbers match??

{{{python

}}}

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